Variant report

Variant	rs11168724
Chromosome Location	chr12:49151364-49151365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10783282	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10783283	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11168713	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168714	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11168720	0.90[ASN][1000 genomes]
rs11168721	0.82[ASN][1000 genomes]
rs11168723	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12172773	0.91[ASN][1000 genomes]
rs12424545	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12829842	0.90[ASN][1000 genomes]
rs4760644	0.94[ASN][1000 genomes]
rs7954589	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs953672	0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11168724	KANSL2	cis	lung	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49134600-49161800	Weak transcription	A549	lung
2	chr12:49144800-49158400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:49144800-49159400	Weak transcription	HSMMtube	muscle
4	chr12:49145400-49152000	Weak transcription	Stomach Mucosa	stomach
5	chr12:49145400-49158400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:49145400-49158600	Weak transcription	Gastric	stomach
7	chr12:49147400-49152200	Weak transcription	Fetal Heart	heart
8	chr12:49147800-49158400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr12:49150600-49160200	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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