Variant report

Variant	rs11168713
Chromosome Location	chr12:49142252-49142253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10783281	0.85[ASN][1000 genomes]
rs10783282	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10783283	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10875869	0.86[ASN][1000 genomes]
rs10875870	0.87[ASN][1000 genomes]
rs10875871	0.88[ASN][1000 genomes]
rs11168714	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168720	0.89[ASN][1000 genomes]
rs11168721	0.82[ASN][1000 genomes]
rs11168723	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11168724	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12172773	0.91[ASN][1000 genomes]
rs12424545	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12810920	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12829842	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4760644	0.88[ASN][1000 genomes]
rs6580693	0.81[ASN][1000 genomes]
rs7954589	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs953672	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332169	chr12:49005807-49150691	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11168713	KANSL2	cis	Thyroid	GTEx
rs11168713	KANSL2	cis	Nerve Tibial	GTEx
rs11168713	KANSL2	cis	lung	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49134600-49161800	Weak transcription	A549	lung
2	chr12:49140600-49143400	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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