Variant report
| Variant | rs6580693 |
|---|---|
| Chromosome Location | chr12:49122913-49122914 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:49122176..49124009-chr12:49206941..49209925,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000167535 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10783275 | 0.87[EUR][1000 genomes] |
| rs10783278 | 0.90[EUR][1000 genomes] |
| rs10783281 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10875861 | 0.92[EUR][1000 genomes] |
| rs10875869 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10875870 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10875871 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1110432 | 0.84[EUR][1000 genomes] |
| rs11168713 | 0.81[ASN][1000 genomes] |
| rs11168714 | 0.81[ASN][1000 genomes] |
| rs12426435 | 0.83[EUR][1000 genomes] |
| rs12810920 | 0.94[ASN][1000 genomes] |
| rs1863541 | 0.83[EUR][1000 genomes] |
| rs1895995 | 0.82[EUR][1000 genomes] |
| rs2277366 | 0.89[EUR][1000 genomes] |
| rs2409085 | 0.83[EUR][1000 genomes] |
| rs2898087 | 0.83[EUR][1000 genomes] |
| rs35717253 | 0.82[EUR][1000 genomes] |
| rs3741629 | 0.83[EUR][1000 genomes] |
| rs3741630 | 0.89[EUR][1000 genomes] |
| rs3741632 | 0.90[EUR][1000 genomes] |
| rs3803025 | 0.91[EUR][1000 genomes] |
| rs3943899 | 0.83[EUR][1000 genomes] |
| rs4760740 | 0.90[EUR][1000 genomes] |
| rs6580690 | 0.83[EUR][1000 genomes] |
| rs7138190 | 0.83[EUR][1000 genomes] |
| rs7138930 | 0.81[EUR][1000 genomes] |
| rs7299276 | 0.89[EUR][1000 genomes] |
| rs7305907 | 0.98[EUR][1000 genomes] |
| rs7306604 | 0.92[EUR][1000 genomes] |
| rs7308699 | 0.92[EUR][1000 genomes] |
| rs7314665 | 0.83[EUR][1000 genomes] |
| rs7954446 | 0.98[EUR][1000 genomes] |
| rs7964546 | 0.93[EUR][1000 genomes] |
| rs7966065 | 0.83[EUR][1000 genomes] |
| rs7974625 | 0.97[EUR][1000 genomes] |
| rs7975030 | 0.98[EUR][1000 genomes] |
| rs9634241 | 0.83[EUR][1000 genomes] |
| rs9634262 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3332169 | chr12:49005807-49150691 | Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
