Variant report

Variant	rs10875871
Chromosome Location	chr12:49141195-49141196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:49129164..49131516-chr12:49139645..49141485,2	MCF-7	breast:
2	chr12:49130555..49133453-chr12:49139757..49141371,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10783277	0.86[TSI][hapmap]
rs10783278	0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap]
rs10783281	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10783282	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10783283	0.81[ASN][1000 genomes]
rs10875849	0.83[CEU][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap]
rs10875861	0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap]
rs10875869	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10875870	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168698	0.84[JPT][hapmap]
rs11168713	0.88[ASN][1000 genomes]
rs11168714	0.87[ASN][1000 genomes]
rs11168720	0.82[ASN][1000 genomes]
rs11168721	0.83[JPT][hapmap]
rs11168723	0.81[ASN][1000 genomes]
rs12172773	0.83[ASN][1000 genomes]
rs12424545	0.81[ASN][1000 genomes]
rs12426435	0.88[CEU][hapmap];0.88[TSI][hapmap]
rs12810920	0.97[ASN][1000 genomes]
rs12829842	0.81[ASN][1000 genomes]
rs1603203	0.86[EUR][1000 genomes]
rs1863541	0.84[JPT][hapmap]
rs2162317	0.84[JPT][hapmap]
rs2277365	0.84[JPT][hapmap]
rs2277366	0.87[CEU][hapmap];0.83[JPT][hapmap]
rs2291728	0.84[JPT][hapmap]
rs3209584	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs3741628	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs3741629	0.88[CEU][hapmap];0.88[TSI][hapmap]
rs3741630	0.88[CEU][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap]
rs3741632	0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap]
rs3803025	0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap]
rs3943899	0.88[CEU][hapmap];0.89[JPT][hapmap];0.88[TSI][hapmap]
rs4500528	0.84[JPT][hapmap]
rs4760644	0.84[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4760740	0.88[CEU][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap]
rs6580689	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs6580693	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7133756	0.88[CEU][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap]
rs7138930	0.88[TSI][hapmap]
rs7139236	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs7304711	0.84[JPT][hapmap]
rs7305907	0.82[EUR][1000 genomes]
rs7314665	0.88[CEU][hapmap];0.88[TSI][hapmap]
rs7954446	0.82[EUR][1000 genomes]
rs7954548	0.88[CEU][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap]
rs7954589	0.81[ASN][1000 genomes]
rs7974625	0.81[EUR][1000 genomes]
rs7975030	0.88[CEU][hapmap];0.84[JPT][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs7975821	0.84[JPT][hapmap]
rs953672	0.88[JPT][hapmap];0.83[MEX][hapmap];0.82[ASN][1000 genomes]
rs9634241	0.88[CEU][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap]
rs9634242	0.88[JPT][hapmap]
rs9634262	0.88[CEU][hapmap];0.84[JPT][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332169	chr12:49005807-49150691	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10875871	C12orf54	cis	cerebellum	SCAN
rs10875871	FAM186B	cis	cerebellum	SCAN
rs10875871	WNT10B	cis	Muscle Skeletal	GTEx
rs10875871	SNORA2B	cis	cerebellum	SCAN
rs10875871	ADCY6	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49134600-49161800	Weak transcription	A549	lung
2	chr12:49140600-49143400	Enhancers	Placenta	Placenta

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