Variant report
| Variant | rs11172003 |
|---|---|
| Chromosome Location | chr12:57247812-57247813 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:57246734..57248448-chr12:57391333..57392959,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258816 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10876942 | 0.95[ASN][1000 genomes] |
| rs11172021 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11172022 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11172026 | 0.95[ASN][1000 genomes] |
| rs11172038 | 0.87[ASN][1000 genomes] |
| rs11172046 | 0.85[ASN][1000 genomes] |
| rs11613486 | 0.87[ASN][1000 genomes] |
| rs4237807 | 0.87[ASN][1000 genomes] |
| rs4415812 | 0.85[ASN][1000 genomes] |
| rs4435043 | 0.87[ASN][1000 genomes] |
| rs4477472 | 0.87[ASN][1000 genomes] |
| rs4759260 | 0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4759261 | 0.95[ASN][1000 genomes] |
| rs4759262 | 0.87[ASN][1000 genomes] |
| rs4759266 | 0.87[ASN][1000 genomes] |
| rs61937853 | 0.97[ASN][1000 genomes] |
| rs7295197 | 0.87[ASN][1000 genomes] |
| rs7307358 | 0.87[ASN][1000 genomes] |
| rs7311658 | 0.87[ASN][1000 genomes] |
| rs7954692 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040850 | chr12:57055011-57679209 | Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 181 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
