Variant report

Variant	rs61937853
Chromosome Location	chr12:57260454-57260455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10876942	0.97[ASN][1000 genomes]
rs11172003	0.97[ASN][1000 genomes]
rs11172021	0.97[ASN][1000 genomes]
rs11172022	0.97[ASN][1000 genomes]
rs11172026	0.97[ASN][1000 genomes]
rs11172038	0.90[ASN][1000 genomes]
rs11172046	0.87[ASN][1000 genomes]
rs11613486	0.90[ASN][1000 genomes]
rs4237807	0.90[ASN][1000 genomes]
rs4415812	0.87[ASN][1000 genomes]
rs4435043	0.90[ASN][1000 genomes]
rs4477472	0.90[ASN][1000 genomes]
rs4759260	1.00[ASN][1000 genomes]
rs4759261	0.97[ASN][1000 genomes]
rs4759262	0.90[ASN][1000 genomes]
rs4759266	0.90[ASN][1000 genomes]
rs7295197	0.90[ASN][1000 genomes]
rs7307358	0.90[ASN][1000 genomes]
rs7311658	0.90[ASN][1000 genomes]
rs7954692	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57256800-57262200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:57259600-57263600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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