Variant report

Variant	rs11172028
Chromosome Location	chr12:57271339-57271340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11171953	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11171963	1.00[EUR][1000 genomes]
rs11171964	1.00[EUR][1000 genomes]
rs11171969	1.00[EUR][1000 genomes]
rs11172032	1.00[EUR][1000 genomes]
rs11172040	1.00[EUR][1000 genomes]
rs11172041	1.00[EUR][1000 genomes]
rs11514185	1.00[EUR][1000 genomes]
rs12299402	1.00[EUR][1000 genomes]
rs12300453	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12302242	1.00[EUR][1000 genomes]
rs12306275	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12317052	1.00[EUR][1000 genomes]
rs12318649	1.00[EUR][1000 genomes]
rs55935220	1.00[EUR][1000 genomes]
rs57115078	1.00[EUR][1000 genomes]
rs58416798	1.00[EUR][1000 genomes]
rs61633783	1.00[EUR][1000 genomes]
rs73326629	1.00[EUR][1000 genomes]
rs73326643	1.00[EUR][1000 genomes]
rs73326652	1.00[EUR][1000 genomes]
rs73326663	1.00[EUR][1000 genomes]
rs73326665	1.00[EUR][1000 genomes]
rs73326670	1.00[EUR][1000 genomes]
rs73326673	1.00[EUR][1000 genomes]
rs73326688	1.00[EUR][1000 genomes]
rs73326690	1.00[EUR][1000 genomes]
rs73326692	1.00[EUR][1000 genomes]
rs73326697	1.00[EUR][1000 genomes]
rs73326698	1.00[EUR][1000 genomes]
rs73337089	1.00[EUR][1000 genomes]
rs73337095	1.00[EUR][1000 genomes]
rs73337101	1.00[EUR][1000 genomes]
rs73338912	1.00[EUR][1000 genomes]
rs74093933	1.00[EUR][1000 genomes]
rs74093937	1.00[EUR][1000 genomes]
rs74093946	1.00[EUR][1000 genomes]
rs74093947	1.00[EUR][1000 genomes]
rs9919706	1.00[EUR][1000 genomes]
rs9919771	1.00[EUR][1000 genomes]
rs9919774	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57267400-57274200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:57268400-57274200	Weak transcription	Fetal Kidney	kidney
3	chr12:57270000-57272200	Enhancers	Liver	Liver
4	chr12:57270200-57271600	Enhancers	K562	blood
5	chr12:57270200-57272400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr12:57270200-57272400	Enhancers	HepG2	liver
7	chr12:57270400-57272000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:57271000-57271400	Enhancers	A549	lung
9	chr12:57271000-57272000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:57271000-57272000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:57271000-57272000	Enhancers	HSMMtube	muscle
12	chr12:57271200-57271600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr12:57271200-57272400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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