Variant report

Variant	rs73326665
Chromosome Location	chr12:57258542-57258543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57257052..57259675-chr12:57321965..57323642,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11171953	1.00[EUR][1000 genomes]
rs11171963	1.00[EUR][1000 genomes]
rs11171964	1.00[EUR][1000 genomes]
rs11171969	1.00[EUR][1000 genomes]
rs11172028	1.00[EUR][1000 genomes]
rs11172032	1.00[EUR][1000 genomes]
rs11172040	1.00[EUR][1000 genomes]
rs11172041	1.00[EUR][1000 genomes]
rs11514185	1.00[EUR][1000 genomes]
rs12299402	1.00[EUR][1000 genomes]
rs12300453	1.00[EUR][1000 genomes]
rs12302242	1.00[EUR][1000 genomes]
rs12306275	1.00[EUR][1000 genomes]
rs12317052	1.00[EUR][1000 genomes]
rs12318649	1.00[EUR][1000 genomes]
rs55935220	1.00[EUR][1000 genomes]
rs57115078	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58416798	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61633783	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326629	1.00[EUR][1000 genomes]
rs73326643	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326652	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326663	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326670	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326673	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326683	1.00[AMR][1000 genomes]
rs73326688	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326692	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326697	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326698	1.00[EUR][1000 genomes]
rs73337089	1.00[EUR][1000 genomes]
rs73337095	1.00[EUR][1000 genomes]
rs73337101	1.00[EUR][1000 genomes]
rs73338912	1.00[EUR][1000 genomes]
rs74093933	1.00[EUR][1000 genomes]
rs74093937	1.00[EUR][1000 genomes]
rs74093946	1.00[EUR][1000 genomes]
rs74093947	1.00[EUR][1000 genomes]
rs9919706	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9919771	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919774	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57255800-57259200	ZNF genes & repeats	Liver	Liver
2	chr12:57256800-57262200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:57258200-57258600	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr12:57258400-57259000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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