Variant report
| Variant | rs11172041 |
|---|---|
| Chromosome Location | chr12:57289757-57289758 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:57287877..57290636-chr12:57297614..57299721,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs11171953 | 1.00[EUR][1000 genomes] |
| rs11171963 | 1.00[EUR][1000 genomes] |
| rs11171964 | 1.00[EUR][1000 genomes] |
| rs11171969 | 1.00[EUR][1000 genomes] |
| rs11172028 | 1.00[EUR][1000 genomes] |
| rs11172032 | 1.00[EUR][1000 genomes] |
| rs11172040 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11514185 | 1.00[EUR][1000 genomes] |
| rs11830866 | 1.00[AMR][1000 genomes] |
| rs12299402 | 1.00[EUR][1000 genomes] |
| rs12300453 | 1.00[EUR][1000 genomes] |
| rs12302242 | 1.00[EUR][1000 genomes] |
| rs12306275 | 1.00[EUR][1000 genomes] |
| rs12317052 | 1.00[EUR][1000 genomes] |
| rs12318649 | 1.00[EUR][1000 genomes] |
| rs55935220 | 1.00[EUR][1000 genomes] |
| rs57115078 | 1.00[EUR][1000 genomes] |
| rs58416798 | 1.00[EUR][1000 genomes] |
| rs61633783 | 1.00[EUR][1000 genomes] |
| rs73326629 | 1.00[EUR][1000 genomes] |
| rs73326643 | 1.00[EUR][1000 genomes] |
| rs73326652 | 1.00[EUR][1000 genomes] |
| rs73326663 | 1.00[EUR][1000 genomes] |
| rs73326665 | 1.00[EUR][1000 genomes] |
| rs73326670 | 1.00[EUR][1000 genomes] |
| rs73326673 | 1.00[EUR][1000 genomes] |
| rs73326688 | 1.00[EUR][1000 genomes] |
| rs73326690 | 1.00[EUR][1000 genomes] |
| rs73326692 | 1.00[EUR][1000 genomes] |
| rs73326697 | 1.00[EUR][1000 genomes] |
| rs73326698 | 1.00[EUR][1000 genomes] |
| rs73337089 | 1.00[EUR][1000 genomes] |
| rs73337095 | 1.00[EUR][1000 genomes] |
| rs73337101 | 1.00[EUR][1000 genomes] |
| rs73338912 | 1.00[EUR][1000 genomes] |
| rs74093933 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74093937 | 1.00[EUR][1000 genomes] |
| rs74093946 | 1.00[EUR][1000 genomes] |
| rs74093947 | 1.00[EUR][1000 genomes] |
| rs9919706 | 1.00[EUR][1000 genomes] |
| rs9919771 | 1.00[EUR][1000 genomes] |
| rs9919774 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040850 | chr12:57055011-57679209 | Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 181 gene(s) | inside rSNPs | diseases |
| 2 | esv3441185 | chr12:57287885-57292183 | ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:57275600-57291200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr12:57288200-57293600 | Enhancers | Liver | Liver |
| 3 | chr12:57289200-57291800 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 4 | chr12:57289600-57290200 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
