Variant report

Variant	rs11172151
Chromosome Location	chr12:57701290-57701291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:57701257..57702169-chr12:57855798..57856658,2	K562	blood:
2	chr12:57701098..57701821-chr12:57856115..57856743,3	MCF-7	breast:
3	chr12:57701019..57704000-chr12:57844441..57847045,2	MCF-7	breast:
4	chr12:57700987..57702535-chr12:57846453..57847264,4	MCF-7	breast:
5	chr12:57701040..57702137-chr12:57846349..57847361,11	MCF-7	breast:
6	chr12:57700187..57703174-chr12:57848889..57851801,2	MCF-7	breast:
7	chr12:57701172..57702207-chr12:57846376..57847363,5	K562	blood:

Variant related genes	Relation type
ENSG00000139269	Chromatin interaction

rs_ID	r²[population]
rs10083191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11172167	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11172213	1.00[AMR][1000 genomes]
rs12296737	1.00[AMR][1000 genomes]
rs12299952	0.84[AFR][1000 genomes]
rs12310527	1.00[AMR][1000 genomes]
rs12310686	1.00[AMR][1000 genomes]
rs12312567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12312780	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12314262	1.00[AMR][1000 genomes]
rs12315459	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12316507	1.00[AMR][1000 genomes]
rs12317318	1.00[AMR][1000 genomes]
rs12317897	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12318999	1.00[AMR][1000 genomes]
rs12319006	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12320772	1.00[AMR][1000 genomes]
rs12322158	1.00[AMR][1000 genomes]
rs12322514	1.00[AMR][1000 genomes]
rs12322636	1.00[AMR][1000 genomes]
rs13377950	1.00[AMR][1000 genomes]
rs17119482	1.00[AMR][1000 genomes]
rs3024944	1.00[AMR][1000 genomes]
rs34000745	1.00[AMR][1000 genomes]
rs34660894	1.00[AMR][1000 genomes]
rs35827450	0.83[AFR][1000 genomes]
rs35958371	1.00[AMR][1000 genomes]
rs9971718	1.00[AMR][1000 genomes]

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57654800-57705400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:57662800-57706000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:57670400-57707000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:57674600-57702600	Weak transcription	HUVEC	blood vessel
5	chr12:57674600-57704400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr12:57675400-57707000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:57677600-57713000	Weak transcription	Stomach Mucosa	stomach
8	chr12:57678000-57713000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:57689200-57701800	Weak transcription	Brain Substantia Nigra	brain
10	chr12:57689200-57703200	Weak transcription	Hela-S3	cervix
11	chr12:57689600-57703000	Weak transcription	HMEC	breast
12	chr12:57690400-57703200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr12:57690800-57702600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr12:57690800-57705400	Weak transcription	Spleen	Spleen
15	chr12:57691000-57736200	Weak transcription	Right Atrium	heart
16	chr12:57692000-57703000	Weak transcription	NH-A	brain
17	chr12:57693200-57705800	Weak transcription	K562	blood
18	chr12:57693600-57743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr12:57693800-57701600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr12:57693800-57702800	Weak transcription	NHLF	lung
21	chr12:57693800-57705200	Weak transcription	Small Intestine	intestine
22	chr12:57693800-57713000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr12:57694000-57701600	Weak transcription	Aorta	Aorta
24	chr12:57694000-57702800	Weak transcription	Fetal Heart	heart
25	chr12:57694000-57703000	Weak transcription	Colon Smooth Muscle	Colon
26	chr12:57694000-57704600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr12:57694000-57705200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr12:57694000-57706200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:57694000-57709400	Weak transcription	Colonic Mucosa	Colon
30	chr12:57694000-57710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr12:57694000-57713200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr12:57694000-57713200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr12:57694000-57780000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr12:57694200-57702600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr12:57694200-57703200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr12:57694200-57734000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr12:57694400-57702400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr12:57694400-57702600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr12:57694400-57703000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr12:57694400-57703000	Weak transcription	NHDF-Ad	bronchial
41	chr12:57694400-57704000	Weak transcription	HepG2	liver
42	chr12:57694400-57704800	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr12:57694400-57732400	Weak transcription	Ovary	ovary
44	chr12:57694400-57735000	Weak transcription	Psoas Muscle	Psoas
45	chr12:57694600-57702400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr12:57694600-57703000	Weak transcription	NHEK	skin
47	chr12:57694800-57702600	Weak transcription	Brain Angular Gyrus	brain
48	chr12:57695200-57794600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr12:57695800-57702600	Weak transcription	Brain Germinal Matrix	brain
50	chr12:57696000-57701600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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