Variant report
| Variant | rs11173186 |
|---|---|
| Chromosome Location | chr12:60235385-60235386 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10783997 | 0.96[EUR][1000 genomes] |
| rs10877330 | 0.94[CEU][hapmap] |
| rs10877332 | 0.94[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs10877333 | 0.94[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs10877334 | 0.97[EUR][1000 genomes] |
| rs10877348 | 0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11173115 | 0.89[CEU][hapmap] |
| rs11173121 | 0.94[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs11173138 | 0.94[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs11173183 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11611304 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11611808 | 0.95[EUR][1000 genomes] |
| rs12581981 | 0.96[EUR][1000 genomes] |
| rs17572569 | 0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17573052 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17650140 | 0.94[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs4323908 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs55863604 | 0.97[EUR][1000 genomes] |
| rs55869967 | 0.97[EUR][1000 genomes] |
| rs56410712 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73113308 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs73115337 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7972065 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869425 | chr12:59746898-60479741 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | esv3365928 | chr12:60042531-60343212 | Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv899134 | chr12:60141518-60263723 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60225400-60240000 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr12:60234400-60238600 | Weak transcription | HUVEC | blood vessel |
