Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10783997	0.96[EUR][1000 genomes]
rs10877332	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10877333	0.97[EUR][1000 genomes]
rs10877334	0.97[EUR][1000 genomes]
rs10877348	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11173121	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11173138	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11173183	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11173186	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611304	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11611808	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12581981	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17572569	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17573052	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17650140	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4323908	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55863604	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs55869967	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73113308	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73115337	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7972065	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60225400-60240000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:60232400-60234400	Enhancers	HUVEC	blood vessel
3	chr12:60232400-60235200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:60232600-60235000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:60234000-60234200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:60234000-60234600	Enhancers	Primary hematopoietic stem cells	blood

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