Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10783997	0.88[EUR][1000 genomes]
rs10877332	0.85[EUR][1000 genomes]
rs10877333	0.89[EUR][1000 genomes]
rs10877334	0.89[EUR][1000 genomes]
rs10877348	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11173121	0.88[EUR][1000 genomes]
rs11173138	0.89[EUR][1000 genomes]
rs11173183	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11173186	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11611304	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11611808	0.87[EUR][1000 genomes]
rs12581981	0.88[EUR][1000 genomes]
rs17572569	0.89[EUR][1000 genomes]
rs17573052	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17650140	0.89[EUR][1000 genomes]
rs4323908	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55863604	0.89[EUR][1000 genomes]
rs55869967	0.89[EUR][1000 genomes]
rs56410712	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73113308	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73115337	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2751107	chr12:60252000-60353533	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60242200-60295600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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