Variant report

Variant	rs11174104
Chromosome Location	chr12:40272457-40272458
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10747886	1.00[JPT][hapmap]
rs10784079	0.91[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs10784118	0.88[CHD][hapmap];0.82[GIH][hapmap]
rs10784223	0.81[ASN][1000 genomes]
rs10784234	0.85[CHB][hapmap]
rs10877733	0.81[JPT][hapmap]
rs10877768	0.81[JPT][hapmap]
rs11174153	0.81[JPT][hapmap]
rs11174238	0.81[JPT][hapmap]
rs11612814	0.81[JPT][hapmap]
rs2029971	0.91[GIH][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4293188	0.88[CHD][hapmap];0.82[GIH][hapmap]
rs4310675	0.81[ASN][1000 genomes]
rs4350423	0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4423249	0.81[ASN][1000 genomes]
rs4429129	0.84[CHB][hapmap]
rs4433640	0.88[CHD][hapmap];0.86[GIH][hapmap]
rs4473002	0.85[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.81[ASN][1000 genomes]
rs4539398	0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4598727	1.00[JPT][hapmap]
rs4604958	1.00[JPT][hapmap]
rs4638370	0.81[ASN][1000 genomes]
rs4768188	0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs4768189	0.91[CHD][hapmap];0.82[GIH][hapmap]
rs6581378	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6581405	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7135701	0.88[CHD][hapmap];0.84[GIH][hapmap]
rs7298896	0.87[JPT][hapmap]
rs7299208	0.85[CHB][hapmap]
rs7306234	0.91[CHD][hapmap];0.86[GIH][hapmap]
rs7308155	1.00[JPT][hapmap]
rs7358574	0.81[ASN][1000 genomes]
rs7958983	0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs7961625	0.85[CHB][hapmap]
rs7962260	0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7963511	0.81[ASN][1000 genomes]
rs7966294	0.81[ASN][1000 genomes]
rs7967956	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7968509	0.85[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.81[ASN][1000 genomes]
rs956066	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40219800-40272600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:40226400-40275000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr12:40247200-40272800	Weak transcription	Left Ventricle	heart
4	chr12:40262600-40280000	Weak transcription	Small Intestine	intestine
5	chr12:40262800-40272600	Weak transcription	Pancreas	Pancrea
6	chr12:40271400-40273400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr12:40271600-40273800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:40271600-40274000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:40272000-40274000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:40272200-40272600	Weak transcription	Aorta	Aorta
11	chr12:40272200-40273400	ZNF genes & repeats	Fetal Intestine Large	intestine
12	chr12:40272400-40274000	ZNF genes & repeats	Fetal Intestine Small	intestine

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