Variant report

Variant	rs956066
Chromosome Location	chr12:40296740-40296741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10747886	0.81[JPT][hapmap]
rs10747943	0.87[ASN][1000 genomes]
rs10784079	0.81[JPT][hapmap]
rs10784261	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs10784274	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10877733	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877743	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10877768	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877772	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10877773	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs11174104	0.81[JPT][hapmap]
rs11174153	0.85[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11174235	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174238	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174291	0.89[ASN][1000 genomes]
rs11612814	0.83[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11833368	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];0.85[TSI][hapmap];0.89[ASN][1000 genomes]
rs1497050	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.89[ASN][1000 genomes]
rs1874560	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2029972	0.85[ASN][1000 genomes]
rs2404349	0.94[CHB][hapmap];0.89[ASN][1000 genomes]
rs4350423	0.81[JPT][hapmap]
rs4473002	0.81[JPT][hapmap]
rs4539398	0.81[JPT][hapmap]
rs4604958	0.81[JPT][hapmap]
rs4768188	0.81[JPT][hapmap]
rs57351062	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7133553	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7134965	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7135753	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.89[ASN][1000 genomes]
rs7298896	0.89[ASN][1000 genomes]
rs7299886	0.84[ASN][1000 genomes]
rs7308155	0.81[JPT][hapmap]
rs7958983	0.81[JPT][hapmap]
rs7962260	0.81[JPT][hapmap]
rs7967956	0.81[JPT][hapmap]
rs7968509	0.81[JPT][hapmap]
rs7971924	1.00[CHB][hapmap]
rs884866	0.83[CHB][hapmap];0.86[ASN][1000 genomes]
rs9325174	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv899026	chr12:40279428-40302581	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv558593	chr12:40279428-40317017	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40296400-40297000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:40296600-40297000	Enhancers	Hela-S3	cervix
3	chr12:40296600-40298200	Enhancers	HUVEC	blood vessel

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