Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10747943	0.85[ASN][1000 genomes]
rs10784261	0.84[ASN][1000 genomes]
rs10784274	0.85[ASN][1000 genomes]
rs10877733	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10877743	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10877768	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10877772	0.85[ASN][1000 genomes]
rs10877773	0.85[ASN][1000 genomes]
rs11174153	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11174235	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174238	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174291	0.86[ASN][1000 genomes]
rs11612814	0.90[ASN][1000 genomes]
rs11833368	0.85[ASN][1000 genomes]
rs1497050	0.85[ASN][1000 genomes]
rs1874560	0.85[ASN][1000 genomes]
rs2029972	0.82[ASN][1000 genomes]
rs2404349	0.85[ASN][1000 genomes]
rs7133553	0.85[ASN][1000 genomes]
rs7134965	0.85[ASN][1000 genomes]
rs7135753	0.85[ASN][1000 genomes]
rs7298896	0.85[ASN][1000 genomes]
rs7299886	0.82[ASN][1000 genomes]
rs884866	0.84[ASN][1000 genomes]
rs9325174	0.85[ASN][1000 genomes]
rs956066	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv899026	chr12:40279428-40302581	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv558593	chr12:40279428-40317017	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40289000-40290800	Weak transcription	Liver	Liver

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