Variant report
| Variant | rs10747943 |
|---|---|
| Chromosome Location | chr12:40288468-40288469 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10784261 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10784274 | 0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10877733 | 0.88[ASN][1000 genomes] |
| rs10877768 | 0.87[ASN][1000 genomes] |
| rs10877772 | 0.96[ASN][1000 genomes] |
| rs10877773 | 0.96[ASN][1000 genomes] |
| rs11174153 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11174235 | 0.87[ASN][1000 genomes] |
| rs11174238 | 0.87[ASN][1000 genomes] |
| rs11612814 | 0.82[ASN][1000 genomes] |
| rs11833368 | 0.96[ASN][1000 genomes] |
| rs1497050 | 0.96[ASN][1000 genomes] |
| rs1874560 | 0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2029972 | 0.92[ASN][1000 genomes] |
| rs2404349 | 0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs57351062 | 0.85[ASN][1000 genomes] |
| rs7133553 | 0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7134965 | 0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7135753 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7298896 | 0.80[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7299886 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs884866 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9325174 | 0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs956066 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899025 | chr12:40191778-40321846 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1049214 | chr12:40197549-40326495 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046428 | chr12:40226283-40439843 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv541481 | chr12:40226283-40439843 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv899026 | chr12:40279428-40302581 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv558593 | chr12:40279428-40317017 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 7 | nsv522471 | chr12:40284666-40288790 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40285000-40289000 | Enhancers | Liver | Liver |
