Variant report

Variant	rs11174291
Chromosome Location	chr12:40316934-40316935
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10877733	0.86[ASN][1000 genomes]
rs10877768	0.89[ASN][1000 genomes]
rs11174153	0.86[ASN][1000 genomes]
rs11174235	0.89[ASN][1000 genomes]
rs11174238	0.89[ASN][1000 genomes]
rs11612814	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2029972	0.82[ASN][1000 genomes]
rs57351062	0.86[ASN][1000 genomes]
rs956066	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv558593	chr12:40279428-40317017	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv2757500	chr12:40299913-40331853	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv2759895	chr12:40299913-40331853	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3693121	chr12:40301720-40317017	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv2760268	chr12:40303505-40317643	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40311400-40317800	Weak transcription	Aorta	Aorta
2	chr12:40311600-40318600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:40313800-40317800	Enhancers	Liver	Liver
4	chr12:40315000-40319200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:40316000-40317200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr12:40316200-40317200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
7	chr12:40316200-40329400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr12:40316400-40317800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:40316400-40318400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr12:40316800-40317000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:40316800-40317600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr12:40316800-40318800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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