Variant report

Variant	rs11174276
Chromosome Location	chr12:62399624-62399625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10877781	0.88[CHB][hapmap]
rs11174275	1.00[MEX][hapmap]
rs11174279	0.90[CHB][hapmap];0.88[YRI][hapmap]
rs1121705	0.80[YRI][hapmap]
rs1156947	0.80[YRI][hapmap]
rs11835677	0.80[YRI][hapmap]
rs1371918	0.90[CHB][hapmap]
rs17125631	0.80[YRI][hapmap]
rs1838380	0.88[CHB][hapmap]
rs4965015	0.90[CHB][hapmap];0.85[CHD][hapmap];0.85[MEX][hapmap];0.88[YRI][hapmap]
rs9669149	0.88[CHB][hapmap];0.85[CHD][hapmap];0.85[MEX][hapmap]
rs9737644	0.90[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62399400-62400000	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links