Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10877781	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11174275	0.85[MEX][hapmap]
rs11174276	0.88[CHB][hapmap];0.85[CHD][hapmap];0.85[MEX][hapmap]
rs11174279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1121705	1.00[JPT][hapmap]
rs11609846	0.86[ASN][1000 genomes]
rs1371918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1440723	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1440724	1.00[JPT][hapmap]
rs1561629	1.00[JPT][hapmap]
rs17125609	1.00[JPT][hapmap]
rs17125631	1.00[JPT][hapmap]
rs17704825	1.00[JPT][hapmap]
rs17705406	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1838380	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4763004	0.97[ASN][1000 genomes]
rs4965015	0.90[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap]
rs7314952	1.00[JPT][hapmap]
rs9668407	1.00[JPT][hapmap]
rs9668420	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9668428	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9669020	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9669783	1.00[JPT][hapmap]
rs9669794	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9737644	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9739051	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9669149	AVIL	cis	parietal	SCAN
rs9669149	STAT6	cis	parietal	SCAN
rs9669149	OS9	cis	parietal	SCAN
rs9669149	ARHGEF25	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62408800-62410200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search: