Variant report

Variant	rs1561629
Chromosome Location	chr12:62400139-62400140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:62392186..62394939-chr12:62398107..62400504,2	MCF-7	breast:
2	chr12:62048195..62048935-chr12:62399595..62401023,3	MCF-7	breast:
3	chr12:62399616..62400427-chr12:62517095..62517711,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10506434	0.86[ASN][1000 genomes]
rs10877781	1.00[JPT][hapmap]
rs11174271	0.90[ASN][1000 genomes]
rs11174279	1.00[JPT][hapmap]
rs1121705	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11836487	0.84[ASN][1000 genomes]
rs12831463	0.84[ASN][1000 genomes]
rs1371918	1.00[JPT][hapmap]
rs1373454	0.84[ASN][1000 genomes]
rs1440723	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1440724	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17125609	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17125631	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17654373	0.84[ASN][1000 genomes]
rs17704825	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17705406	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1838380	1.00[JPT][hapmap]
rs34008431	0.84[ASN][1000 genomes]
rs4965015	1.00[JPT][hapmap]
rs56085119	0.86[ASN][1000 genomes]
rs56279780	0.84[ASN][1000 genomes]
rs7314952	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73314023	0.86[ASN][1000 genomes]
rs9668399	0.84[ASN][1000 genomes]
rs9668407	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9668420	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9668428	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9669003	0.84[ASN][1000 genomes]
rs9669020	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9669149	1.00[JPT][hapmap]
rs9669351	0.84[ASN][1000 genomes]
rs9669481	0.81[ASN][1000 genomes]
rs9669783	0.84[ASN][1000 genomes]
rs9669794	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9737644	1.00[JPT][hapmap]
rs9739051	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9739059	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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