Variant report

Variant	rs11835677
Chromosome Location	chr12:62389287-62389288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11174276	0.80[YRI][hapmap]
rs1121705	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1156947	1.00[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17125602	0.83[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs17125631	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17125707	0.93[MEX][hapmap]
rs7314952	0.84[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899152	chr12:62370229-62390624	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62386400-62389800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62386400-62390000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:62386400-62392600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr12:62387800-62392600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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