Variant report

Variant	rs17125602
Chromosome Location	chr12:62386908-62386909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11174192	1.00[ASW][hapmap]
rs11174204	1.00[ASW][hapmap]
rs1156947	0.83[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs11835677	0.83[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs12816044	1.00[ASW][hapmap]
rs17125707	1.00[ASW][hapmap];0.82[CEU][hapmap];0.84[CHD][hapmap];0.93[MEX][hapmap];0.81[TSI][hapmap];0.83[AFR][1000 genomes]
rs4335596	1.00[ASW][hapmap]
rs4763158	1.00[ASW][hapmap]
rs983765	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899152	chr12:62370229-62390624	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17125602	snoU13	cis	Thyroid	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62386400-62387400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr12:62386400-62389800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62386400-62390000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:62386400-62392600	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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