Variant report

Variant	rs11174204
Chromosome Location	chr12:62259072-62259073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10492353	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11174192	1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[MKK][hapmap]
rs11174201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11174207	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs12423224	0.84[ASN][1000 genomes]
rs12423666	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12424427	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12579684	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12581426	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12582721	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12813362	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12815579	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12816044	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12816097	0.82[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs12818321	0.84[CHB][hapmap]
rs12818949	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12821294	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs17125406	1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs17125602	1.00[ASW][hapmap]
rs17125707	1.00[ASW][hapmap]
rs17577144	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs17605016	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs17605182	1.00[CHB][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs2061205	1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs2061206	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs34677376	0.84[CHB][hapmap]
rs35150293	0.93[ASN][1000 genomes]
rs35923169	0.93[ASN][1000 genomes]
rs4335596	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4763158	1.00[ASW][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.95[MKK][hapmap]
rs7136585	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7397172	0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs7485627	0.82[JPT][hapmap];0.95[MKK][hapmap]
rs971843	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs983765	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62252200-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62257800-62263400	Weak transcription	Adipose Nuclei	Adipose
3	chr12:62257800-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:62258600-62260000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:62258800-62259600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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