Variant report

Variant	rs12815579
Chromosome Location	chr12:62144671-62144672
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10492353	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11174192	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11174201	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11174204	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11174207	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs12423224	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12423666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12424427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424523	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12425635	0.93[AFR][1000 genomes]
rs12579684	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12581426	0.84[ASN][1000 genomes]
rs12582721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs12809181	0.86[AFR][1000 genomes]
rs12813362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12816044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12816097	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12818321	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs12818949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1588054	0.86[AFR][1000 genomes]
rs1605324	0.81[AFR][1000 genomes]
rs17125406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17577144	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17605016	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17605182	1.00[CHB][hapmap]
rs2061205	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2061206	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs34677376	0.84[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35150293	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35846182	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35923169	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4335596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4763158	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap]
rs6581422	1.00[CEU][hapmap]
rs7136585	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs71465106	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71465109	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7397172	0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7485627	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs7488706	0.93[EUR][1000 genomes]
rs7488978	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7954960	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs971843	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs983765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv826402	chr12:62116803-62178453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv826403	chr12:62130037-62190482	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62140400-62147200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62140800-62149200	Weak transcription	Ovary	ovary
3	chr12:62143800-62146000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:62144000-62145400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:62144200-62144800	Enhancers	Adipose Nuclei	Adipose
6	chr12:62144200-62145000	Enhancers	Liver	Liver
7	chr12:62144400-62144800	Enhancers	Fetal Lung	lung
8	chr12:62144400-62146800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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