Variant report
| Variant | rs12425635 |
|---|---|
| Chromosome Location | chr12:62047288-62047289 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12423224 | 0.86[AFR][1000 genomes] |
| rs12424427 | 0.93[AFR][1000 genomes] |
| rs12424523 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12809181 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12815579 | 0.93[AFR][1000 genomes] |
| rs12816097 | 0.86[AFR][1000 genomes] |
| rs12818949 | 0.93[AFR][1000 genomes] |
| rs12821294 | 0.86[AFR][1000 genomes] |
| rs12833305 | 0.88[EUR][1000 genomes] |
| rs1588054 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1605324 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1876276 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34012846 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34677376 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs35846182 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs71465106 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs71465109 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs7397172 | 0.86[AFR][1000 genomes] |
| rs7488706 | 0.95[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7488978 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7954960 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1042044 | chr12:61256015-62196885 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:62042200-62048000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
