Variant report

Variant	rs12833305
Chromosome Location	chr12:62025662-62025663
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10431564	0.84[EUR][1000 genomes]
rs10506428	0.82[EUR][1000 genomes]
rs11174080	0.85[EUR][1000 genomes]
rs12425635	0.88[EUR][1000 genomes]
rs12809181	0.88[EUR][1000 genomes]
rs12818321	0.83[JPT][hapmap]
rs1588054	0.88[EUR][1000 genomes]
rs1605324	0.88[EUR][1000 genomes]
rs1876276	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34012846	0.88[EUR][1000 genomes]
rs34677376	0.87[JPT][hapmap]
rs35406376	0.84[EUR][1000 genomes]
rs4558228	0.84[EUR][1000 genomes]
rs6581422	0.88[CEU][hapmap]
rs7302068	0.85[EUR][1000 genomes]
rs7316414	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832434	chr12:61823919-62033626	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3431497	chr12:62004734-62036863	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62023400-62026000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links