Variant report

Variant	rs34677376
Chromosome Location	chr12:62116367-62116368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10492353	0.84[CHB][hapmap]
rs11174192	0.84[CHB][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap]
rs11174201	0.84[CHB][hapmap]
rs11174204	0.84[CHB][hapmap]
rs11174207	0.84[CHB][hapmap]
rs12423224	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12423666	0.84[CHB][hapmap];1.00[YRI][hapmap]
rs12424427	0.84[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12424523	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12425635	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12579684	0.81[CHB][hapmap]
rs12582721	0.84[CHB][hapmap];1.00[YRI][hapmap]
rs12809181	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12813362	0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs12815579	0.84[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12816044	0.84[CHB][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs12816097	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12818321	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12818949	0.84[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12821294	0.84[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1588054	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1605324	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17125406	0.84[CHB][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs17605016	0.84[CHB][hapmap]
rs17605182	0.84[CHB][hapmap];0.85[MEX][hapmap]
rs1876276	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2061205	0.84[CHB][hapmap]
rs2061206	0.84[CHB][hapmap]
rs34012846	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35150293	0.87[EUR][1000 genomes]
rs35846182	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35923169	0.82[EUR][1000 genomes]
rs4335596	0.84[CHB][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs4763158	0.93[MEX][hapmap];0.95[TSI][hapmap]
rs7136585	0.84[CHB][hapmap];0.85[MEX][hapmap]
rs71465106	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71465109	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7397172	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7485627	1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs7488706	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7488978	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7954960	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs971843	0.84[CHB][hapmap]
rs983765	0.84[CHB][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62104200-62116800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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