Variant report

Variant	rs17605182
Chromosome Location	chr12:62265349-62265350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10492353	1.00[CHB][hapmap]
rs11174192	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap]
rs11174201	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11174204	1.00[CHB][hapmap];0.83[MEX][hapmap];0.84[ASN][1000 genomes]
rs11174207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174255	1.00[YRI][hapmap]
rs12423666	1.00[CHB][hapmap]
rs12424427	1.00[CHB][hapmap]
rs12579684	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12582721	1.00[CHB][hapmap]
rs12813362	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12815579	1.00[CHB][hapmap]
rs12816044	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.85[MEX][hapmap]
rs12816097	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs12818321	0.84[CHB][hapmap]
rs12818949	1.00[CHB][hapmap]
rs12821294	1.00[CHB][hapmap]
rs17125406	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap]
rs17577144	0.91[CHB][hapmap]
rs17605016	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2061205	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2061206	1.00[CHB][hapmap]
rs34677376	0.84[CHB][hapmap];0.85[MEX][hapmap]
rs35150293	0.80[EUR][1000 genomes]
rs4335596	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.85[MEX][hapmap]
rs4763158	0.92[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap]
rs7136585	1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7485627	0.82[CHD][hapmap];0.83[MEX][hapmap]
rs971843	1.00[CHB][hapmap]
rs983765	1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62261600-62266000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:62263400-62265600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr12:62263600-62265400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr12:62263600-62266000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr12:62263600-62266000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:62263600-62266200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:62264000-62265600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr12:62264200-62265400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr12:62264200-62265600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr12:62264400-62265400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr12:62264400-62265600	Enhancers	Primary T cells from cord blood	blood
12	chr12:62264400-62265800	Enhancers	Dnd41	blood
13	chr12:62264600-62265600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:62265000-62265400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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