Variant report

Variant	rs12579684
Chromosome Location	chr12:62250638-62250639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10492353	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11174192	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11174201	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11174207	1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12423224	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12423666	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12424427	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12581426	0.94[ASN][1000 genomes]
rs12582721	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12813362	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12815579	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12816044	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12816097	0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12818321	0.81[CHB][hapmap]
rs12818949	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12821294	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17125406	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17577144	0.89[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap]
rs17605016	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17605182	1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2061205	1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2061206	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs34677376	0.81[CHB][hapmap]
rs35150293	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35923169	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4335596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4763158	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs7136585	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7397172	0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7485627	0.83[JPT][hapmap]
rs971843	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs983765	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62249200-62251200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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