Variant report

Variant	rs11174192
Chromosome Location	chr12:62228464-62228465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10492353	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11174201	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11174204	1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[MKK][hapmap];0.92[ASN][1000 genomes]
rs11174207	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12423224	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12423666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12424427	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12424523	0.84[EUR][1000 genomes]
rs12579684	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12581426	0.90[ASN][1000 genomes]
rs12582721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs12813362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815579	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12816044	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs12816097	0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12818321	0.84[CHB][hapmap]
rs12818949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12821294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17125406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17125602	1.00[ASW][hapmap]
rs17577144	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17605016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17605182	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.80[EUR][1000 genomes]
rs2061205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2061206	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs34677376	0.84[CHB][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs35150293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35846182	0.85[EUR][1000 genomes]
rs35923169	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4335596	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs4763158	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs6581422	1.00[CEU][hapmap]
rs7136585	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs71465106	0.87[EUR][1000 genomes]
rs71465109	0.87[EUR][1000 genomes]
rs7397172	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7485627	0.85[CEU][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs7488706	0.87[EUR][1000 genomes]
rs7488978	0.87[EUR][1000 genomes]
rs7954960	0.87[EUR][1000 genomes]
rs971843	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs983765	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11174192	IL23A	cis	cerebellum	SCAN
rs11174192	KIF5A	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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