Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12423224	0.93[EUR][1000 genomes]
rs12424427	0.93[EUR][1000 genomes]
rs12424523	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12425635	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12809181	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12813362	0.87[EUR][1000 genomes]
rs12815579	0.93[EUR][1000 genomes]
rs12816097	0.91[EUR][1000 genomes]
rs12818949	0.93[EUR][1000 genomes]
rs12821294	0.93[EUR][1000 genomes]
rs1588054	0.95[AMR][1000 genomes]
rs1605324	0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17125406	0.86[EUR][1000 genomes]
rs1876276	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34012846	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34677376	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35150293	0.87[EUR][1000 genomes]
rs35846182	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35923169	0.82[EUR][1000 genomes]
rs71465106	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71465109	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7397172	0.91[EUR][1000 genomes]
rs7488978	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7954960	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2829973	chr12:62078770-62115165	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv520898	chr12:62078770-62115165	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
5	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62104200-62114200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62104200-62116800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:62107000-62109000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:62108000-62109000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:62108000-62114400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:62108800-62114000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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