Variant report

Variant	rs11174299
Chromosome Location	chr12:40318557-40318558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10506138	0.86[ASN][1000 genomes]
rs10877779	0.86[ASN][1000 genomes]
rs11174266	0.86[ASN][1000 genomes]
rs11174285	0.86[ASN][1000 genomes]
rs11174292	0.86[ASN][1000 genomes]
rs11174293	0.86[ASN][1000 genomes]
rs11174427	0.86[ASN][1000 genomes]
rs11514248	0.86[ASN][1000 genomes]
rs74089317	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899025	chr12:40191778-40321846	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1049214	chr12:40197549-40326495	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2757500	chr12:40299913-40331853	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv2759895	chr12:40299913-40331853	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40311600-40318600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:40315000-40319200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:40316200-40329400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:40316800-40318800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:40317400-40325400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:40317600-40319200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:40317800-40329200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:40318200-40322000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr12:40318400-40319200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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