Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10506138	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1086490	0.83[CEU][hapmap]
rs10877779	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10877837	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11174266	1.00[ASN][1000 genomes]
rs11174285	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11174292	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11174293	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11174299	0.86[ASN][1000 genomes]
rs11174370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11174532	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11174533	0.93[EUR][1000 genomes]
rs11174536	0.80[EUR][1000 genomes]
rs11514248	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564221	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11564282	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs12371119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28370607	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28370611	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4128689	1.00[CHB][hapmap]
rs73280629	0.86[EUR][1000 genomes]
rs74089317	1.00[ASN][1000 genomes]
rs992851	0.83[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40337400-40350600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:40338000-40366000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:40338600-40346600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:40340800-40346400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:40341000-40347600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr12:40343000-40346600	Enhancers	Pancreatic Islets	Pancreatic Islet

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