Variant report

Variant rs11175254
Chromosome Location chr12:64476472-64476473
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:64434000-64481600 Weak transcription HUVEC blood vessel
2 chr12:64440000-64479200 Weak transcription Esophagus oesophagus
3 chr12:64451200-64476600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr12:64453000-64476600 Weak transcription Brain Inferior Temporal Lobe brain
5 chr12:64453800-64476600 Weak transcription Brain Substantia Nigra brain
6 chr12:64454800-64476600 Weak transcription Brain Hippocampus Middle brain
7 chr12:64455200-64481600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr12:64457000-64510600 Weak transcription HepG2 liver
9 chr12:64459000-64476600 Weak transcription Brain Cingulate Gyrus brain
10 chr12:64459000-64479800 Weak transcription Gastric stomach
11 chr12:64460200-64476600 Weak transcription Brain Germinal Matrix brain
12 chr12:64460200-64476800 Weak transcription Fetal Kidney kidney
13 chr12:64460800-64476600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr12:64466000-64476600 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr12:64467000-64482400 Weak transcription Aorta Aorta
16 chr12:64467200-64476800 Weak transcription NH-A brain
17 chr12:64471000-64482400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr12:64472000-64481600 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr12:64472200-64480400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr12:64472200-64482000 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr12:64473400-64478000 Enhancers Stomach Mucosa stomach
22 chr12:64473800-64482000 Weak transcription Fetal Intestine Large intestine
23 chr12:64474000-64477800 Enhancers Fetal Stomach stomach
24 chr12:64474000-64478200 Enhancers Fetal Heart heart
25 chr12:64474200-64476600 Enhancers Colon Smooth Muscle Colon
26 chr12:64474200-64478000 Enhancers Duodenum Smooth Muscle Duodenum
27 chr12:64474200-64478000 Enhancers Fetal Lung lung
28 chr12:64474400-64476600 Weak transcription Adipose Nuclei Adipose
29 chr12:64474400-64477000 Enhancers Right Atrium heart
30 chr12:64474400-64477200 Enhancers Sigmoid Colon Sigmoid Colon
31 chr12:64474400-64482400 Weak transcription H9 Cell Line embryonic stem cell
32 chr12:64474600-64476600 Enhancers Rectal Mucosa Donor 31 rectum
33 chr12:64474600-64476800 Genic enhancers A549 lung
34 chr12:64474600-64482400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr12:64474600-64482600 Weak transcription Left Ventricle heart
36 chr12:64474800-64476600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr12:64474800-64476600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr12:64474800-64481800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr12:64474800-64521400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr12:64475000-64476600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr12:64475000-64476600 Weak transcription Brain Anterior Caudate brain
42 chr12:64475000-64476600 Enhancers Rectal Mucosa Donor 29 rectum
43 chr12:64475000-64482000 Weak transcription Fetal Intestine Small intestine
44 chr12:64475200-64476600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
45 chr12:64475200-64476600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr12:64475200-64476600 Weak transcription Breast Myoepithelial Primary Cells Breast
47 chr12:64475200-64476600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr12:64475200-64476600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr12:64475200-64476600 Weak transcription Ovary ovary
50 chr12:64475200-64476600 Weak transcription Rectal Smooth Muscle rectum

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