Variant report

Variant	rs11175273
Chromosome Location	chr12:64577828-64577829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64237199..64239966-chr12:64575764..64577967,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196935	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11175254	1.00[AFR][1000 genomes]
rs11175259	1.00[AFR][1000 genomes]
rs11175343	1.00[CEU][hapmap]
rs12227635	1.00[AFR][1000 genomes]
rs12371171	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64567800-64585600	Weak transcription	Fetal Intestine Small	intestine
2	chr12:64570200-64578400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:64574600-64587600	Weak transcription	Left Ventricle	heart
4	chr12:64574600-64597000	Weak transcription	Esophagus	oesophagus
5	chr12:64574800-64586400	Weak transcription	Primary T cells from cord blood	blood
6	chr12:64575000-64615200	Weak transcription	Psoas Muscle	Psoas
7	chr12:64575200-64597000	Weak transcription	Aorta	Aorta
8	chr12:64575400-64586000	Weak transcription	Ovary	ovary
9	chr12:64575400-64587600	Weak transcription	Spleen	Spleen
10	chr12:64575400-64590400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:64575600-64586200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr12:64575600-64586800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr12:64575600-64587400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:64575600-64587600	Weak transcription	Brain Angular Gyrus	brain
15	chr12:64575600-64607600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:64575600-64615000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr12:64575800-64615200	Weak transcription	Fetal Stomach	stomach
18	chr12:64576000-64581000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:64576000-64587400	Weak transcription	Brain Anterior Caudate	brain
20	chr12:64576000-64587600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr12:64576000-64587800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr12:64576000-64597200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr12:64576000-64615000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr12:64576200-64580800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr12:64576200-64580800	Weak transcription	Adipose Nuclei	Adipose
26	chr12:64576200-64586600	Weak transcription	Brain Substantia Nigra	brain
27	chr12:64576200-64586800	Weak transcription	Liver	Liver
28	chr12:64576200-64587400	Weak transcription	Brain Hippocampus Middle	brain
29	chr12:64576200-64587800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr12:64576200-64589600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr12:64576400-64578000	Weak transcription	HSMMtube	muscle
32	chr12:64576400-64579000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:64576400-64580400	Weak transcription	A549	lung
34	chr12:64576400-64580400	Weak transcription	NH-A	brain
35	chr12:64576400-64587400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr12:64576600-64578000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr12:64576600-64578200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr12:64576600-64580400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr12:64576600-64580400	Weak transcription	HMEC	breast
40	chr12:64576600-64580400	Weak transcription	NHEK	skin
41	chr12:64576600-64580400	Weak transcription	NHLF	lung
42	chr12:64576600-64580600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr12:64576600-64581000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr12:64576600-64587400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr12:64576800-64578000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr12:64576800-64580200	Weak transcription	Hela-S3	cervix
47	chr12:64576800-64580400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr12:64576800-64580400	Weak transcription	HUVEC	blood vessel
49	chr12:64576800-64580600	Weak transcription	Osteobl	bone
50	chr12:64577000-64580400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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