Variant report

Variant	rs11176965
Chromosome Location	chr12:68346462-68346463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10784659	0.82[AFR][1000 genomes]
rs10878705	0.88[AFR][1000 genomes]
rs10878717	0.83[AFR][1000 genomes]
rs12228138	0.88[AFR][1000 genomes]
rs1548650	0.85[AFR][1000 genomes]
rs1548651	0.85[AFR][1000 genomes]
rs1905452	0.85[AFR][1000 genomes]
rs2190735	0.83[AFR][1000 genomes]
rs2870964	0.83[AFR][1000 genomes]
rs4913266	0.82[AFR][1000 genomes]
rs4913386	0.84[AFR][1000 genomes]
rs56229556	0.82[AFR][1000 genomes]
rs6581784	0.87[AFR][1000 genomes]
rs7310108	0.84[AFR][1000 genomes]
rs7312407	0.88[AFR][1000 genomes]
rs7954182	0.84[AFR][1000 genomes]
rs7979547	0.87[AFR][1000 genomes]
rs7980416	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv899219	chr12:68293419-68353649	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68341400-68351000	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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