Variant report

Variant	rs2870964
Chromosome Location	chr12:68370854-68370855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10735943	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10748092	0.94[ASN][1000 genomes]
rs10784659	0.87[AFR][1000 genomes]
rs10784660	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10784661	0.92[ASN][1000 genomes]
rs10784662	0.92[ASN][1000 genomes]
rs10784664	0.98[ASN][1000 genomes]
rs10878702	0.84[AFR][1000 genomes]
rs10878705	0.93[AFR][1000 genomes]
rs10878708	0.92[ASN][1000 genomes]
rs10878709	0.92[ASN][1000 genomes]
rs10878710	0.92[ASN][1000 genomes]
rs10878711	0.93[ASN][1000 genomes]
rs10878717	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10878722	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11176965	0.83[AFR][1000 genomes]
rs11176970	0.92[ASN][1000 genomes]
rs11176971	0.92[ASN][1000 genomes]
rs11176976	0.94[ASN][1000 genomes]
rs11176977	0.94[ASN][1000 genomes]
rs12228138	0.95[AFR][1000 genomes]
rs1548650	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1548651	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1548652	0.94[ASN][1000 genomes]
rs1548653	0.94[ASN][1000 genomes]
rs1860007	0.94[ASN][1000 genomes]
rs1905452	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2097999	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2190735	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2839995	0.94[ASN][1000 genomes]
rs4141136	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4913266	0.87[AFR][1000 genomes]
rs4913386	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56229556	0.87[AFR][1000 genomes]
rs6581784	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7310108	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7312407	0.92[AFR][1000 genomes]
rs7954182	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7959275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7962230	0.94[ASN][1000 genomes]
rs7965959	0.92[ASN][1000 genomes]
rs7979547	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7980416	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68368400-68375000	Weak transcription	HSMMtube	muscle
2	chr12:68370200-68371000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:68370400-68371000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:68370400-68371000	Enhancers	HUES6 Cell Line	embryonic stem cell

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