Variant report

Variant	rs6581784
Chromosome Location	chr12:68356205-68356206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:68355362..68357559-chr12:68358486..68360884,2	K562	blood:
2	chr12:68348695..68350706-chr12:68353935..68356300,2	MCF-7	breast:
3	chr12:68350570..68352870-chr12:68355780..68357472,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10748092	1.00[ASN][1000 genomes]
rs10784659	0.91[AFR][1000 genomes]
rs10784660	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10784661	0.98[ASN][1000 genomes]
rs10784662	0.98[ASN][1000 genomes]
rs10784664	0.92[ASN][1000 genomes]
rs10878702	0.87[AFR][1000 genomes]
rs10878705	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10878708	0.98[ASN][1000 genomes]
rs10878709	0.98[ASN][1000 genomes]
rs10878710	0.98[ASN][1000 genomes]
rs10878711	0.99[ASN][1000 genomes]
rs10878717	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10878722	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11176965	0.87[AFR][1000 genomes]
rs11176970	0.98[ASN][1000 genomes]
rs11176971	0.98[ASN][1000 genomes]
rs11176976	1.00[ASN][1000 genomes]
rs11176977	1.00[ASN][1000 genomes]
rs12228138	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1548650	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548651	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548652	1.00[ASN][1000 genomes]
rs1548653	1.00[ASN][1000 genomes]
rs1860007	1.00[ASN][1000 genomes]
rs1905452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2097999	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2190735	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2839995	1.00[ASN][1000 genomes]
rs2870964	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4141136	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4913266	0.91[AFR][1000 genomes]
rs4913386	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56229556	0.91[AFR][1000 genomes]
rs7310108	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7312407	0.96[AFR][1000 genomes]
rs7954182	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7959275	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7962230	1.00[ASN][1000 genomes]
rs7965959	0.98[ASN][1000 genomes]
rs7979547	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7980416	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68356000-68356800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:68356200-68356400	Enhancers	Left Ventricle	heart
3	chr12:68356200-68363200	Weak transcription	Psoas Muscle	Psoas
4	chr12:68356200-68370600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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