Variant report

Variant	rs11177475
Chromosome Location	chr12:41016690-41016691
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:41015832..41017042-chr12:41315031..41316480,11	MCF-7	breast:
2	chr12:41015843..41016729-chr12:41315089..41315598,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10506171	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11177162	0.94[AMR][1000 genomes]
rs11177169	0.83[AMR][1000 genomes]
rs11177179	0.94[AMR][1000 genomes]
rs11177184	0.83[AMR][1000 genomes]
rs11177260	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11177334	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11177347	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11177354	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11177413	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11177478	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11561483	0.83[AMR][1000 genomes]
rs11832449	0.82[AMR][1000 genomes]
rs11838212	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12230312	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12230855	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12230872	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12231820	0.83[AMR][1000 genomes]
rs1463738	0.82[AMR][1000 genomes]
rs1602636	0.85[EUR][1000 genomes]
rs1918947	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2897043	0.85[EUR][1000 genomes]
rs35955232	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3751167	0.87[AMR][1000 genomes]
rs3751168	0.82[AMR][1000 genomes]
rs3751175	0.82[AMR][1000 genomes]
rs3829294	0.94[AMR][1000 genomes]
rs5002282	0.82[AMR][1000 genomes]
rs66485183	0.83[AMR][1000 genomes]
rs66518640	0.83[AMR][1000 genomes]
rs7299467	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7310318	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73271812	0.94[AMR][1000 genomes]
rs7976812	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8181694	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41015800-41017600	Enhancers	A549	lung

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