Variant report

Variant	rs1602636
Chromosome Location	chr12:41008231-41008232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10431578	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs10506171	0.94[EUR][1000 genomes]
rs11177109	1.00[CEU][hapmap]
rs11177162	0.89[EUR][1000 genomes]
rs11177169	0.89[EUR][1000 genomes]
rs11177179	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs11177184	0.89[EUR][1000 genomes]
rs11177260	0.91[EUR][1000 genomes]
rs11177334	0.94[EUR][1000 genomes]
rs11177347	0.94[EUR][1000 genomes]
rs11177354	0.94[EUR][1000 genomes]
rs11177413	0.97[EUR][1000 genomes]
rs11177475	0.85[EUR][1000 genomes]
rs11177478	0.95[EUR][1000 genomes]
rs11561483	0.87[EUR][1000 genomes]
rs11832449	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11838212	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12230312	0.97[EUR][1000 genomes]
rs12230855	0.92[EUR][1000 genomes]
rs12230872	0.93[EUR][1000 genomes]
rs12231675	0.88[EUR][1000 genomes]
rs12231820	0.88[EUR][1000 genomes]
rs1463738	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1918947	0.94[EUR][1000 genomes]
rs2897043	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35955232	0.97[EUR][1000 genomes]
rs3751167	0.87[EUR][1000 genomes]
rs3751168	0.86[EUR][1000 genomes]
rs3751175	0.89[EUR][1000 genomes]
rs3829294	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs5002282	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs66485183	0.89[EUR][1000 genomes]
rs66518640	0.89[EUR][1000 genomes]
rs7133098	0.87[CEU][hapmap]
rs7299467	0.94[EUR][1000 genomes]
rs7304329	0.87[CEU][hapmap]
rs7310318	0.94[EUR][1000 genomes]
rs73269994	0.88[EUR][1000 genomes]
rs73271812	0.89[EUR][1000 genomes]
rs7976812	0.97[EUR][1000 genomes]
rs8181694	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41008000-41008800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr12:41008000-41009000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:41008000-41009600	Enhancers	GM12878-XiMat	blood
4	chr12:41008200-41008800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:41008200-41008800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:41008200-41009000	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links