Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10431578	0.88[EUR][1000 genomes]
rs10506171	0.94[EUR][1000 genomes]
rs11177162	0.89[EUR][1000 genomes]
rs11177169	0.89[EUR][1000 genomes]
rs11177179	0.89[EUR][1000 genomes]
rs11177184	0.89[EUR][1000 genomes]
rs11177260	0.91[EUR][1000 genomes]
rs11177334	0.94[EUR][1000 genomes]
rs11177347	0.94[EUR][1000 genomes]
rs11177354	0.94[EUR][1000 genomes]
rs11177413	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11177475	0.85[EUR][1000 genomes]
rs11177478	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11561483	0.87[EUR][1000 genomes]
rs11832449	0.89[EUR][1000 genomes]
rs11838212	0.91[EUR][1000 genomes]
rs12230312	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12230855	0.92[EUR][1000 genomes]
rs12230872	0.93[EUR][1000 genomes]
rs12231675	0.88[EUR][1000 genomes]
rs12231820	0.88[EUR][1000 genomes]
rs1463738	0.85[EUR][1000 genomes]
rs1602636	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918947	0.94[EUR][1000 genomes]
rs35955232	0.97[EUR][1000 genomes]
rs3751167	0.87[EUR][1000 genomes]
rs3751168	0.86[EUR][1000 genomes]
rs3751175	0.89[EUR][1000 genomes]
rs3829294	0.89[EUR][1000 genomes]
rs5002282	0.89[EUR][1000 genomes]
rs66485183	0.89[EUR][1000 genomes]
rs66518640	0.89[EUR][1000 genomes]
rs7299467	0.94[EUR][1000 genomes]
rs7310318	0.94[EUR][1000 genomes]
rs73269994	0.88[EUR][1000 genomes]
rs73271812	0.89[EUR][1000 genomes]
rs7976812	0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs8181694	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41001800-41008200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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