Variant report

Variant	rs11181001
Chromosome Location	chr12:41948196-41948197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11180999	0.93[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1458156	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1458157	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs1458158	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2034923	0.81[EUR][1000 genomes]
rs2256412	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2468310	0.93[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2710264	0.93[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2730803	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs2730814	0.81[CEU][hapmap]
rs2733284	0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2733285	0.81[EUR][1000 genomes]
rs2733287	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs285556	0.93[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs285560	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs285574	0.81[CHB][hapmap]
rs285575	0.92[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs285590	0.93[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs285592	0.93[CEU][hapmap];0.83[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs285593	0.93[CEU][hapmap];0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs285595	0.93[CEU][hapmap];0.83[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs389166	0.80[ASN][1000 genomes]
rs437178	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7954518	0.93[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41925600-41949800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:41942800-41956800	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41944600-41966200	Weak transcription	Ovary	ovary
4	chr12:41945400-41956800	Weak transcription	Aorta	Aorta
5	chr12:41947200-41948600	Enhancers	Brain Germinal Matrix	brain
6	chr12:41947200-41953000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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