Variant report

Variant	rs437178
Chromosome Location	chr12:41935008-41935009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1026464	0.85[EUR][1000 genomes]
rs11180999	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11181001	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1379758	0.83[EUR][1000 genomes]
rs1379759	0.83[EUR][1000 genomes]
rs1379760	0.83[EUR][1000 genomes]
rs1379761	0.81[EUR][1000 genomes]
rs1379763	0.82[EUR][1000 genomes]
rs1379764	0.81[EUR][1000 genomes]
rs1379769	0.82[EUR][1000 genomes]
rs1379770	0.81[EUR][1000 genomes]
rs1379771	0.82[EUR][1000 genomes]
rs1379772	0.82[EUR][1000 genomes]
rs1379774	0.83[EUR][1000 genomes]
rs1458156	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1458157	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1458158	0.88[EUR][1000 genomes]
rs1458159	0.81[EUR][1000 genomes]
rs1458160	0.85[EUR][1000 genomes]
rs1870285	0.82[EUR][1000 genomes]
rs1870286	0.82[EUR][1000 genomes]
rs1902906	0.83[EUR][1000 genomes]
rs2034923	0.88[EUR][1000 genomes]
rs2125286	0.83[EUR][1000 genomes]
rs2125287	0.83[EUR][1000 genomes]
rs2199028	0.86[EUR][1000 genomes]
rs2250003	0.83[EUR][1000 genomes]
rs2250009	0.83[EUR][1000 genomes]
rs2253528	0.85[EUR][1000 genomes]
rs2253633	0.83[EUR][1000 genomes]
rs2253634	0.85[EUR][1000 genomes]
rs2255035	0.82[EUR][1000 genomes]
rs2255145	0.82[EUR][1000 genomes]
rs2255152	0.81[EUR][1000 genomes]
rs2255404	0.83[EUR][1000 genomes]
rs2256412	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2405920	0.83[EUR][1000 genomes]
rs2405921	0.83[EUR][1000 genomes]
rs2468310	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2468314	0.85[EUR][1000 genomes]
rs2468315	0.83[EUR][1000 genomes]
rs2468316	0.83[EUR][1000 genomes]
rs2468317	0.83[EUR][1000 genomes]
rs2608689	0.83[EUR][1000 genomes]
rs2608690	0.83[EUR][1000 genomes]
rs2608691	0.82[EUR][1000 genomes]
rs2608692	0.82[EUR][1000 genomes]
rs2608696	0.82[EUR][1000 genomes]
rs2608697	0.82[EUR][1000 genomes]
rs2608702	0.81[EUR][1000 genomes]
rs2608704	0.82[EUR][1000 genomes]
rs2608705	0.82[EUR][1000 genomes]
rs2608706	0.82[EUR][1000 genomes]
rs2608708	0.81[EUR][1000 genomes]
rs2608711	0.83[EUR][1000 genomes]
rs2608714	0.83[EUR][1000 genomes]
rs2608715	0.85[EUR][1000 genomes]
rs2608716	0.84[EUR][1000 genomes]
rs2608718	0.83[EUR][1000 genomes]
rs2710264	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2730802	0.82[EUR][1000 genomes]
rs2730803	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2730805	0.81[EUR][1000 genomes]
rs2730807	0.84[EUR][1000 genomes]
rs2730814	0.86[EUR][1000 genomes]
rs2730824	0.83[EUR][1000 genomes]
rs2730827	0.85[EUR][1000 genomes]
rs2733275	0.85[EUR][1000 genomes]
rs2733276	0.83[EUR][1000 genomes]
rs2733278	0.85[EUR][1000 genomes]
rs2733280	0.86[EUR][1000 genomes]
rs2733284	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2733285	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2733287	0.88[EUR][1000 genomes]
rs2733298	0.82[EUR][1000 genomes]
rs2733299	0.82[EUR][1000 genomes]
rs285556	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs285560	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs285575	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs285590	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs285592	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs285593	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs285595	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7954518	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41925600-41949800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:41925800-41944800	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links