Variant report

Variant	rs11182334
Chromosome Location	chr12:44318590-44318591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:44310016..44313786-chr12:44314229..44318943,4	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10785485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11182298	0.81[ASN][1000 genomes]
rs11182299	0.81[ASN][1000 genomes]
rs11182300	0.81[ASN][1000 genomes]
rs11182303	0.81[ASN][1000 genomes]
rs11182304	0.81[ASN][1000 genomes]
rs11182308	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11182310	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11182323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11182331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11182340	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11182343	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11182347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11182349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11182351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11182352	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11182419	1.00[AFR][1000 genomes]
rs12227646	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12228658	0.81[ASN][1000 genomes]
rs12229491	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12229940	0.81[ASN][1000 genomes]
rs12230284	0.81[ASN][1000 genomes]
rs12230727	0.81[ASN][1000 genomes]
rs12230751	0.81[ASN][1000 genomes]
rs12231136	1.00[AFR][1000 genomes]
rs17093804	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1948516	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2199390	1.00[AFR][1000 genomes]
rs3829807	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4519146	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930682	0.81[ASN][1000 genomes]
rs720944	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7296222	0.81[ASN][1000 genomes]
rs7350559	0.86[ASN][1000 genomes]
rs766961	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44307400-44324000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44311400-44324600	Weak transcription	Left Ventricle	heart
3	chr12:44315200-44324200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:44316000-44321200	Weak transcription	HSMMtube	muscle
5	chr12:44317400-44321200	Weak transcription	Fetal Intestine Large	intestine
6	chr12:44317600-44321400	Weak transcription	Fetal Intestine Small	intestine
7	chr12:44317600-44325400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:44317800-44321600	Weak transcription	Fetal Stomach	stomach
9	chr12:44318400-44318600	Weak transcription	Esophagus	oesophagus
10	chr12:44318400-44319600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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