Variant report

Variant	rs11182729
Chromosome Location	chr12:45267057-45267058
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10506259	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880694	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10880698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10880699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182700	0.85[ASN][1000 genomes]
rs11182704	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11182709	0.87[ASN][1000 genomes]
rs11182712	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182714	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182717	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11182722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11182723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11182724	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11182725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11182726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11182728	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11182730	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11182732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11182796	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11182798	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11182806	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11182807	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11182809	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11534985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12227311	0.87[ASN][1000 genomes]
rs12227622	1.00[CHB][hapmap]
rs12228073	1.00[CHB][hapmap]
rs12228476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12580287	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12581903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17095196	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17095198	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17095247	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs2658949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2658950	0.86[CHB][hapmap];0.86[AMR][1000 genomes]
rs2658976	0.94[CHB][hapmap]
rs2703049	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2703052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2703056	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2703057	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2710418	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2710421	0.86[AMR][1000 genomes]
rs2710424	0.94[CHB][hapmap];0.86[AMR][1000 genomes]
rs447760	0.81[CHB][hapmap]
rs58724768	0.85[AMR][1000 genomes]
rs59646766	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61438749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71459276	0.95[ASN][1000 genomes]
rs7295338	0.88[CHB][hapmap]
rs7315817	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7968450	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832394	chr12:45077573-45269305	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv1036926	chr12:45131884-45273648	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv541484	chr12:45131884-45273648	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45258600-45267800	Weak transcription	Brain Germinal Matrix	brain
2	chr12:45260000-45268000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:45262000-45267800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr12:45263000-45269000	Active TSS	Fetal Brain Female	brain
5	chr12:45264800-45271200	Active TSS	Fetal Brain Male	brain
6	chr12:45265600-45268000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:45266000-45270600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr12:45266400-45267200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:45266400-45268600	Active TSS	Brain Angular Gyrus	brain
10	chr12:45266400-45269200	Active TSS	Brain Anterior Caudate	brain
11	chr12:45266600-45267400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr12:45266800-45267200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:45266800-45267200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr12:45266800-45267400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr12:45266800-45267800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:45266800-45268800	Active TSS	Brain Hippocampus Middle	brain
17	chr12:45266800-45269200	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr12:45266800-45270800	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr12:45267000-45267200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:45267000-45267200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr12:45267000-45267400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr12:45267000-45267800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:45267000-45267800	Active TSS	Primary T cells from cord blood	blood
24	chr12:45267000-45268000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:45267000-45268800	Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr12:45267000-45269200	Active TSS	Primary T helper naive cells fromperipheralblood	blood

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