Variant report

Variant	rs17095247
Chromosome Location	chr12:45319123-45319124
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10506259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10880694	0.93[CHB][hapmap];1.00[AMR][1000 genomes]
rs10880698	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10880699	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10880727	1.00[AMR][1000 genomes]
rs10880728	1.00[AMR][1000 genomes]
rs10880729	1.00[AMR][1000 genomes]
rs11182700	0.89[AMR][1000 genomes]
rs11182704	0.93[CHB][hapmap];1.00[AMR][1000 genomes]
rs11182709	1.00[AMR][1000 genomes]
rs11182712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182713	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182714	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182722	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182723	1.00[EUR][1000 genomes]
rs11182724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182725	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182726	1.00[EUR][1000 genomes]
rs11182729	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs11182730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11182732	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs11182770	1.00[AMR][1000 genomes]
rs11182771	1.00[AMR][1000 genomes]
rs11182772	1.00[AMR][1000 genomes]
rs11182785	1.00[AMR][1000 genomes]
rs11182789	1.00[AMR][1000 genomes]
rs11182790	1.00[AMR][1000 genomes]
rs11182791	1.00[AMR][1000 genomes]
rs11182792	1.00[AMR][1000 genomes]
rs11182793	1.00[AMR][1000 genomes]
rs11182795	1.00[GIH][hapmap]
rs11182796	1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs11182798	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.87[AMR][1000 genomes]
rs11182806	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs11182807	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs11182809	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs11534985	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs12227311	1.00[AMR][1000 genomes]
rs12227622	0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12228073	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12228476	0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes]
rs12580287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12581554	1.00[CEU][hapmap]
rs12581903	0.93[CHB][hapmap];1.00[AMR][1000 genomes]
rs12582602	1.00[AMR][1000 genomes]
rs12829945	0.89[AMR][1000 genomes]
rs17095196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17095441	1.00[CEU][hapmap]
rs2658949	1.00[EUR][1000 genomes]
rs2658950	0.85[CHB][hapmap]
rs2658976	0.87[CHB][hapmap];1.00[GIH][hapmap]
rs2703049	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2703052	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs2703056	1.00[EUR][1000 genomes]
rs2703057	1.00[EUR][1000 genomes]
rs2710418	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[EUR][1000 genomes]
rs2710424	0.87[CHB][hapmap];1.00[GIH][hapmap]
rs447760	0.93[CHB][hapmap]
rs57726055	1.00[AMR][1000 genomes]
rs59646766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61438749	1.00[EUR][1000 genomes]
rs7295338	0.87[CHB][hapmap]
rs7300104	1.00[AMR][1000 genomes]
rs7315817	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap]
rs7968450	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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