Variant report
| Variant | rs12581554 |
|---|---|
| Chromosome Location | chr12:45509113-45509114 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr12:45508923-45509123 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNA5SP361 | TF binding region |
rSNPs within LD-proxies of this variant (count:45)
| rs_ID | r2[population] |
|---|---|
| rs1025088 | 1.00[CEU][hapmap] |
| rs10492285 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs10736024 | 1.00[CEU][hapmap] |
| rs10785564 | 1.00[CEU][hapmap] |
| rs11182798 | 1.00[CEU][hapmap] |
| rs11182806 | 1.00[CEU][hapmap] |
| rs11182807 | 1.00[CEU][hapmap] |
| rs11182809 | 1.00[CEU][hapmap] |
| rs11182840 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12304662 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12306609 | 0.92[ASN][1000 genomes] |
| rs12311766 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12578220 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs12578314 | 1.00[CEU][hapmap] |
| rs12581545 | 0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12582369 | 1.00[CEU][hapmap] |
| rs17095247 | 1.00[CEU][hapmap] |
| rs17095441 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs17095452 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17095474 | 1.00[EUR][1000 genomes] |
| rs17095527 | 1.00[EUR][1000 genomes] |
| rs17095584 | 1.00[CEU][hapmap] |
| rs17095688 | 1.00[CEU][hapmap] |
| rs17095706 | 1.00[CEU][hapmap] |
| rs17095713 | 1.00[CEU][hapmap] |
| rs17095716 | 1.00[CEU][hapmap] |
| rs17095721 | 1.00[CEU][hapmap] |
| rs17095722 | 1.00[CEU][hapmap] |
| rs1896027 | 1.00[CEU][hapmap] |
| rs1904052 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2037856 | 1.00[CEU][hapmap] |
| rs2037857 | 1.00[CEU][hapmap] |
| rs2042098 | 0.92[ASN][1000 genomes] |
| rs41331147 | 1.00[CEU][hapmap] |
| rs4768087 | 1.00[CEU][hapmap] |
| rs4768600 | 1.00[CEU][hapmap] |
| rs4768606 | 1.00[CEU][hapmap] |
| rs59774135 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6582542 | 1.00[CEU][hapmap] |
| rs7135029 | 1.00[CEU][hapmap] |
| rs7304389 | 1.00[CEU][hapmap] |
| rs7304749 | 1.00[CEU][hapmap] |
| rs7315817 | 1.00[CEU][hapmap] |
| rs74083403 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7968450 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3351644 | chr12:45345597-45529449 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
