Variant report

Variant	rs17095452
Chromosome Location	chr12:45515207-45515208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45366332..45368097-chr12:45514780..45516888,12	MCF-7	breast:
2	chr12:45364370..45366746-chr12:45513644..45516185,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1025088	1.00[CEU][hapmap]
rs10492285	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10736024	1.00[CEU][hapmap]
rs10785564	1.00[CEU][hapmap]
rs11182798	1.00[CEU][hapmap]
rs11182806	1.00[CEU][hapmap]
rs11182807	1.00[CEU][hapmap]
rs11182809	1.00[CEU][hapmap]
rs11182840	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12304662	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12306609	0.92[ASN][1000 genomes]
rs12311766	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12578220	1.00[CEU][hapmap];0.80[JPT][hapmap];1.00[EUR][1000 genomes]
rs12578314	1.00[CEU][hapmap]
rs12581545	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12581554	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12582369	1.00[CEU][hapmap]
rs17095247	1.00[CEU][hapmap]
rs17095441	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17095474	1.00[EUR][1000 genomes]
rs17095527	1.00[EUR][1000 genomes]
rs17095584	1.00[CEU][hapmap]
rs17095688	1.00[CEU][hapmap]
rs17095706	1.00[CEU][hapmap]
rs17095713	1.00[CEU][hapmap]
rs17095716	1.00[CEU][hapmap]
rs17095721	1.00[CEU][hapmap]
rs17095722	1.00[CEU][hapmap]
rs1896027	1.00[CEU][hapmap]
rs1904052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037856	1.00[CEU][hapmap]
rs2037857	1.00[CEU][hapmap]
rs2042098	0.92[ASN][1000 genomes]
rs41331147	1.00[CEU][hapmap]
rs4768087	1.00[CEU][hapmap]
rs4768600	1.00[CEU][hapmap]
rs4768606	1.00[CEU][hapmap]
rs55994528	0.91[AFR][1000 genomes]
rs56409009	0.87[AFR][1000 genomes]
rs56672176	0.82[AFR][1000 genomes]
rs56842412	0.87[AFR][1000 genomes]
rs57283482	0.91[AFR][1000 genomes]
rs57514011	0.91[AFR][1000 genomes]
rs57516582	0.91[AFR][1000 genomes]
rs57590365	0.91[AFR][1000 genomes]
rs57752448	1.00[AFR][1000 genomes]
rs58025806	0.91[AFR][1000 genomes]
rs58379974	0.87[AFR][1000 genomes]
rs58615264	0.91[AFR][1000 genomes]
rs58938625	0.91[AFR][1000 genomes]
rs58992779	0.91[AFR][1000 genomes]
rs59111701	0.91[AFR][1000 genomes]
rs59344692	0.91[AFR][1000 genomes]
rs59579391	0.87[AFR][1000 genomes]
rs59774135	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60098273	0.83[AFR][1000 genomes]
rs60717004	0.91[AFR][1000 genomes]
rs61226604	0.87[AFR][1000 genomes]
rs61679354	0.91[AFR][1000 genomes]
rs6582542	1.00[CEU][hapmap]
rs7135029	1.00[CEU][hapmap]
rs7304389	1.00[CEU][hapmap]
rs7304749	1.00[CEU][hapmap]
rs7315817	1.00[CEU][hapmap]
rs74080326	1.00[AFR][1000 genomes]
rs74080682	0.82[AFR][1000 genomes]
rs74080929	0.87[AFR][1000 genomes]
rs74080930	0.87[AFR][1000 genomes]
rs74080931	0.91[AFR][1000 genomes]
rs74080935	0.91[AFR][1000 genomes]
rs74080976	0.91[AFR][1000 genomes]
rs74080979	0.91[AFR][1000 genomes]
rs74080982	0.91[AFR][1000 genomes]
rs74080983	0.91[AFR][1000 genomes]
rs74080985	0.91[AFR][1000 genomes]
rs74080987	0.91[AFR][1000 genomes]
rs74080989	0.91[AFR][1000 genomes]
rs74080993	0.91[AFR][1000 genomes]
rs74080995	0.91[AFR][1000 genomes]
rs74080997	0.91[AFR][1000 genomes]
rs74083221	0.91[AFR][1000 genomes]
rs74083224	0.91[AFR][1000 genomes]
rs74083303	0.87[AFR][1000 genomes]
rs74083306	0.87[AFR][1000 genomes]
rs74083403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74083404	0.96[AFR][1000 genomes]
rs74083405	0.96[AFR][1000 genomes]
rs7968450	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351644	chr12:45345597-45529449	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45515000-45515400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:45515000-45515800	Enhancers	Cortex derived primary cultured neurospheres	brain

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