Variant report
| Variant | rs59774135 |
|---|---|
| Chromosome Location | chr12:45506863-45506864 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr12:45506649-45506863 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | POLR2A | chr12:45506712-45506908 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | RAD21 | chr12:45506567-45506939 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | RAD21 | chr12:45506571-45506928 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNA5SP361 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10492285 | 1.00[EUR][1000 genomes] |
| rs11182840 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12304662 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12306609 | 0.97[ASN][1000 genomes] |
| rs12311766 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12578220 | 1.00[EUR][1000 genomes] |
| rs12581545 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12581554 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17095452 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17095474 | 1.00[EUR][1000 genomes] |
| rs17095527 | 1.00[EUR][1000 genomes] |
| rs1904052 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2042098 | 0.97[ASN][1000 genomes] |
| rs74083403 | 1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3351644 | chr12:45345597-45529449 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
